定量生物物理研究组

中文| English
姚元根
E-mail:yyg@mail.hzau.edu.cn
主要研究方向和兴趣:生物组学数据分析、生物网络动力学分析、斑图时空动力学等。

研究方向和兴趣:生物组学数据分析、生物网络动力学分析、斑图时空动力学等。

2004~2008 华中师范大学物理科学与技术学院,物理学专业,学士;

2008~2011 华中师范大学物理科学与技术学院,理论物理专业,硕士;

2011~2014 华中科技大学生命科学与技术学院,生物信息学专业, 博士;

2014~ 华农农业大学理学院,讲师、副教授;

科学研究课题

1. 粗糙脉孢菌milRNA和qiRNA的生物信息学分析,国家自然科学青年基金,31601071,2017.01-2019.12,17万元

2. 心脏诱导多能干细胞网络的动力学和鲁棒性研究,华中农业大学自主科技创新基金(青年教师科技创新专项),2662015QC041,2015.01-2016.12,8万元

3. 基于下一代测序数据的 qiRNA 计算研究,华中农业大学自主科技创新基金(新进博士科研启动专项),2662014BQ069,2014.09-2015.12, 5万

科研论文

2020

  • Yuangen Yao⁎, Huiyu Zhang, Haiyou Deng.milRNApredictor: Genome-free prediction of fungi milRNAs by incorporating k-mer scheme and distance-dependent pair potential.Genomics. 2020, 112(3): 2233-2240.

  • Guanghui Cheng, Weidan Liu, Rong Gui,Yuangen Yao*.Sine-Wiener bounded noise-induced logical stochastic resonance in a two-well potential system.Chaos, Solitons & Fractals. 2020, 131, 109514

  • Rong Gui, Yue Wang,Yuangen Yao*, Guanghui Cheng.Enhanced logical vibrational resonance in a two-well potential system.Chaos, Solitons & Fractals. 2020 (In press)

2019

  • Yuangen Yao∗, Chunwei Su, Juan Xiong.Enhancement of weak signal detection in the Hodgkin–Huxley neuron subjected to electromagnetic fluctuation.Physica A.2019, 531, 121734

  • Guanghui Cheng, Rong Gui,Yuangen Yao∗.Enhancement of temporal regularity and degradation of spatial synchronization induced by cross-correlated sine-Wiener noises in regular and small-world neuronal networks.Physica A. 2019, 520, 361–369

  • Yuangen Yao, Ming Yi, Dejia Hou∗Delay-induced synchronization transition in a small-world neuronal network of FitzHugh–Nagumo neurons subjected to sine-Wiener bounded noise.International Journal of Modern Physics B. 2019, 33, 1950053

2018

  • Yuangen Yao, Chengzhang Ma, Canjun Wang, Ming Yi, Rong Gui*. Detection of sub-threshold periodic signal by multiplicative and additive cross-correlated sine-Wiener noises in the FitzHugh–Nagumo neuron. Physica A: Statistical Mechanics and its Applications. 492, 1247-1256, 2018.( IF: 2.243)

  • Yuangen Yao, Jun Ma. Weak periodic signal detection by sine-Wiener-noise-induced resonance in the FitzHugh–Nagumo neuron. Cognitive Neurodynamics. 2018.( IF: 1.828)

  • Yuangen Yao, Lijian Yang, Canjun Wang, Quan Liu, Rong Gui, Juan Xiong, Ming Yi*. Subthreshold periodic signal detection by bounded noise-induced resonance in the FitzHugh-Nagumo neuron. Complexity. 5632650, 2018( IF:4.621)

  • Yuangen Yao, Wei Cao, Qiming Pei, Chengzhang Ma*, Ming Yi. Breakup of spiral wave and order-disorder spatial pattern transition induced by spatially uniform cross-correlated sine-Wiener noises in a regular network of Hodgkin-Huxley neurons. Complexity. 8793298, 2018.( IF:4.621)

  • Yuangen Yao, Jun Ma*.Signal transmission by autapse with constant or time-periodic coupling intensity in the FitzHugh–Nagumo neuron.Eur. Phys. J. Special Topics. 2018, 227, 757–766.

2017

  • Yuangen Yao, Chengzhang Ma, Haiyou Deng, Quan Liu, Wei Cao, Rong Gui, Tianquan Feng, Ming Yi*. Dynamics and robustness of the cardiac progenitor cell induced pluripotent stem cell network during cell phenotypes transition. IET Systems Biology. 2017, 11:1, 1-7 (SCI收录, IF: 0.764)

  • Yuangen Yao, Haiyou Deng, Ming Yi, Jun Ma*. Impact of bounded noise on the formation and instability of spiral wave in a 2D lattice of neurons. Scientific Reports. 2017, 7: 43151 ( IF=5.228)

  • Yuangen Yao, Haiyou Deng, Chengzhang Ma, Ming Yi, Jun Ma*. Impact of bounded noise and rewiring on the formation and instability of spiral waves in a small-world network of Hodgkin-Huxley neurons. 2017, 12:1, e0171273 ( IF: 3.057)

  • Yuangen Yao, Ming Yi, Dejia Hou*. Coherence resonance induced by cross-correlated sine-Wiener noises in the FitzHugh-Nagumo neurons. International Journal of Modern Physics B. 2017, ( IF: 0.85)

  • Yuangen Yao, Rong Gui, Quan Liu, Ming Yi, Haiyou Deng*. Diverse effects of distance cutoff and residue interval on the performance of distance-dependent atom-pair potential in protein structure prediction. BMC bioinformatics. 18(1), 542, 2017.( IF:2.448)

2016

  • Haiyou Deng, Quan Liu, Wei Cao, Rong Gui, Chengzhang Ma,Yuangen Yao *.qiRNApredictor: A Novel Computational Program for the Prediction of qiRNAs in Neurospora crassa. PLOS ONE, 2016, 11:7. (SCI收录, IF: 3.057)

  • Yuangen Yao, Chengzhang Ma, Haiyou Deng, Quan Liu, Jiying Zhang and Ming Yi*. plantMirP: an efficient computational program for the prediction of plant pre-miRNA by incorporating knowledge-based energy features. Molecular BioSystems, 2016, 12, 3124~3131 (SCI收录, IF: 2.829)

2014

  • Yuangen Yao ,Lili Ma, Qiong Jia, Wankun Deng, Zexian Liu, Yuanwei Zhang, Jian Ren, Yu Xue, Haibo Jia* and Qing Yang*. Systematic characterization of small RNAome during zebrafish early developmental stages. BMC Genomics, 2014, 15:117. (SCI收录, IF:4.6)