定量生物物理研究组

中文| English
姚元根
E-mail:yyg@mail.hzau.edu.cn
研究方向和兴趣:神经动力学和信息学、计算基因组学、智能计算与农业等。


学习和工作经历

  • 2004~2008 华中师范大学物理科学与技术学院,物理学专业,学士;

  • 2008~2011 华中师范大学物理科学与技术学院,理论物理专业,硕士;

  • 2011~2014 华中科技大学生命科学与技术学院,生物信息学专业, 博士;

  • 2014~ 华农农业大学理学院,讲师、副教授;


科学研究课题

[1]粗糙脉孢菌milRNA和qiRNA的生物信息学分析,国家自然科学青年基金,31601071,2017.01-2019.12,17万,主持,已结题

[2]心脏诱导多能干细胞网络的动力学和鲁棒性研究,校自主科技创新基金,2662015QC041,2015.01-2016.12,8万,主持,已结题

[3]基于下一代测序数据的 qiRNA 计算研究,校自主科技创新基金,2662014BQ069,2014.09-2015.12,5万,主持,已结题

科研论文

2020

[23] Yuangen Yao*, Jun Ma. Logical Chaotic Resonance in a Bistable System. International Journal of Bifurcation and Chaos, 2020, 30(13), 2050196.

[22] Yuangen Yao*, Bowen Gong, Daxiang Lu, Rong Gui. Weak Quasiperiodic Signal Propagation through Multilayer Feed-Forward Hodgkin-Huxley Neuronal Network. Complexity, 2020, 6821591.

[21] Yuangen Yao, Guanghui Cheng, Rong Gui*. Periodic and aperiodic force-induced logical stochastic resonance in a bistable system. Chaos, 2020, 30(7), 073125.

[20] Huiyu Zhang, Hua Wang, Yuangen Yao*, Ming Yi. PlantMirP-Rice: An Efficient Program for Rice Pre-miRNA Prediction. Genes, 2020, 11(6), 662.

[19] Yuangen Yao*, Huiyu Zhang, Haiyou Deng. milRNApredictor: Genome-free prediction of fungi milRNAs by incorporating k-mer scheme and distance-dependent pair potential. Genomics, 2020, 112(3), 2233-2240.

[18] Guanghui Cheng, Weidan Liu, Rong Gui, Yuangen Yao*. Sine-Wiener bounded noise-induced logical stochastic resonance in a two-well potential system. Chaos, Solitons & Fractals, 2020, 131, 109514.

[17] Rong Gui, Yue Wang, Yuangen Yao*, Guanghui Cheng. Enhanced logical vibrational resonance in a two-well potential system. Chaos, Solitons & Fractals, 2020, 138, 109952.

2019

[16] Yuangen Yao, Chunwei Su, Juan Xiong. Enhancement of weak signal detection in the Hodgkin–Huxley neuron subjected to electromagnetic fluctuation. Physica A: Statistical Mechanics and its Applications, 2019, 531, 121734.

[15] Guanghui Cheng, Rong Gui, Yuangen Yao. Enhancement of temporal regularity and degradation of spatial synchronization induced by cross-correlated sine-Wiener noises in regular and small-world neuronal networks. Physica A: Statistical Mechanics and its Applications, 2019, 520, 361~369.

[14] Yuangen Yao, Ming Yi, Dejia Hou Delay-induced synchronization transition in a small-world neuronal network of FitzHugh–Nagumo neurons subjected to sine-Wiener bounded noise. International Journal of Modern Physics B, 2019, 33(8), 1950053.

2018

[13] Yuangen Yao, Chengzhang Ma, Canjun Wang, Ming Yi, Rong Gui*. Detection of sub-threshold periodic signal by multiplicative and additive cross-correlated sine-Wiener noises in the FitzHugh–Nagumo neuron. Physica A: Statistical Mechanics and its Applications, 2018, 492, 1247~1256.

[12] Yuangen Yao*, Jun Ma. Weak periodic signal detection by sine-Wiener-noise-induced resonance in the FitzHugh–Nagumo neuron. Cognitive Neurodynamics, 2018, 12(3), 343~349.

[11] Yuangen Yao, Lijian Yang, Canjun Wang, Quan Liu, Rong Gui, Juan Xiong, Ming Yi*. Subthreshold periodic signal detection by bounded noise-induced resonance in the FitzHugh-Nagumo neuron. Complexity, 2018, 5632650.

[10] Yuangen Yao, Wei Cao, Qiming Pei, Chengzhang Ma*, Ming Yi. Breakup of spiral wave and order-disorder spatial pattern transition induced by spatially uniform cross-correlated sine-Wiener noises in a regular network of Hodgkin-Huxley neurons. Complexity, 2018, 8793298.

[9] Yuangen Yao, Jun Ma*. Signal transmission by autapse with constant or time-periodic coupling intensity in the FitzHugh–Nagumo neuron. European physical journal-special topics, 2018, 227(7-9), 757~766.

2017

[8] Yuangen Yao, Chengzhang Ma, Haiyou Deng, Quan Liu, Wei Cao, Rong Gui, Tianquan Feng, Ming Yi*. Dynamics and robustness of the cardiac progenitor cell induced pluripotent stem cell network during cell phenotypes transition. IET Systems Biology. 2017, 11(1), 1~7.

[7] Yuangen Yao, Haiyou Deng, Ming Yi, Jun Ma*. Impact of bounded noise on the formation and instability of spiral wave in a 2D lattice of neurons. Scientific Reports. 2017, 7, 43151.

[6] Yuangen Yao, Haiyou Deng, Chengzhang Ma, Ming Yi, Jun Ma*. Impact of bounded noise and rewiring on the formation and instability of spiral waves in a small-world network of Hodgkin-Huxley neurons. PLOS ONE, 2017, 12(1), e0171273.

[5] Yuangen Yao*, Ming Yi, Dejia Hou. Coherence resonance induced by cross-correlated sine-Wiener noises in the FitzHugh-Nagumo neurons. International Journal of Modern Physics B. 2017, 31(28), 1750204.

[4] Yuangen Yao, Rong Gui, Quan Liu, Ming Yi, Haiyou Deng*. Diverse effects of distance cutoff and residue interval on the performance of distance-dependent atom-pair potential in protein structure prediction. BMC bioinformatics, 2017, 18, 542.

2016

[3] Haiyou Deng, Quan Liu, Wei Cao, Rong Gui, Chengzhang Ma, Yuangen Yao*. qiRNApredictor: A Novel Computational Program for the Prediction of qiRNAs in Neurospora crassa. PLOS ONE, 2016, 11(7), e0159487.

[2] Yuangen Yao, Chengzhang Ma, Haiyou Deng, Quan Liu, Jiying Zhang and Ming Yi*. plantMirP: an efficient computational program for the prediction of plant pre-miRNA by incorporating knowledge-based energy features. Molecular BioSystems, 2016, 12(10), 3124~3131.

2014

[1] Yuangen Yao, Lili Ma, Qiong Jia, Wankun Deng, Zexian Liu, Yuanwei Zhang, Jian Ren, Yu Xue, Haibo Jia*, Qing Yang*. Systematic characterization of small RNAome during zebrafish early developmental stages. BMC Genomics, 2014, 15, 117.


计算机软件著作权

[1] qiRNApredictor粗糙脉孢菌中qiRNA的预测软件,著作权人:姚元根,登记号:2017SR413790,完成日期:2015, 6.

[2] BooleanNetAnalyzer布尔网络分析软件,著作权人:姚元根,登记号:2017SR468381,完成日期:2015, 11.

[3] plantMirP融合基于知识能量特征的植物microRNA前体预测软件,著作权人:姚元根,登记号:2017SR413291,完成日期:2016, 4.



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